Up until now Cody's fate is in Canon, He basically becomes a real bastard after Order 66 in the comics. The Empire starts using conscripts, and they're nowhere near what Cody was serving with in the Clone army, they're subpar soldiers who hate the clones. Cody is commissioned to train them into the 501st, but hates every aspect of it believing that they can never ever matchup to the Clones. He does believe in the ideals of the New World Order. But he doesn't care about the men who serve under him or who he trains. He basically sends them out on suicide missions and enjoys it when they die.
He mourns as more and more clone troopers die or are retired due to the speed of their aging. But has a lot of respect for Vader, who leads his men a lot like Anakin did except with more saber run throughs and force choking.
It was really a sad end for Cody who became the anti-Rex. In Rebels I wanted nothing more then Cody and Rex running into each other on the battle field and taking off their helmets.
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My name is Ozymandias, King of Kings;
Look on my Works, ye Mighty, and despair!
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