How is it an issue for the CIA, the CIA has no domestic police authority. They can gather intelligence and investigate internationally, they can submit intelligence that might have a domestic effect to a organization like the FBI or SS.
Why would the NSA care about physical evidence.
NGIA is imagery and mapping intelligence, they wouldn't care about aircraft parts.
You could argue about Defense Intelligence, but they would more then likely be subborned to the FBI and CIA in this case since terrorism falls into those two organizations.
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