Looking around online it seems like Intel outperforms on performance tests between the two. It's little cheaper too so that helps. I was leaning that way before I saw the tests so I'm definitely going to go with the Q6600.
That leaves me with the motherboard decision. I really don't know anything about the differences in motherboards. Processors and Video Cards are a lot easier to pick out. I'll need an SLI motherboard to run the two 8800 GT's, but that's about all I know at this point.
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